Pinto, C. M., J.S. Vargas Soto, E. Flatt, K. Barboza, and A. Whitworth. 2024. "Identifying wildlife road crossing mitigation sites using a multi-data approach-A case study from southwestern Costa Rica". Journal of Environmental Management 361:121263.
Vargas Soto, J.S., E.J. Flatt, and A. Whitworth, R. Salom-Perez, D. Espinoza-Munoz. 2023. "More than one way to count a cat: estimation of ocelot population density using frameworks for marked and unmarked species". Biodiversity and Conservation 32:1821-1838.
Vargas Soto, J. S., C. Beirne, A. Whitworth, J. C. Cruz Diaz, E. Flatt, R. Pillco‐Huarcaya, E. R. Olson, A. Azofeifa, G. Saborío‐R, R. Salom‐Pérez, D. Espinoza‐Muñoz, L. Hay, L. Whittaker, C. Roldán, R. Bedoya‐Arrieta, E. N. Broadbent, and P. K. Molnár. 2022. Human disturbance and shifts in vertebrate community composition in a biodiversity hotspot. Conservation Biology 36.
Phillips, J. A., J. S. Vargas Soto, S. Pawar, J. Koprivnikar, D. P. Benesh, and P. K. Molnár. 2022. "The effects of phylogeny, habitat and host characteristics on the thermal sensitivity of helminth development". Proceedings of the Royal Society B: Biological Sciences 289.
Krkošek, M., M. Jarvis-Cross, K. Wadhawan, I. Berry, J.-P. R. Soucy, K. Bodner, A. Greiner, L. Krichel, S. Penk, D. Shea, J. S. Vargas Soto, E. W. Tekwa, N. Mideo, and P. K. Molnár. 2021. "Establishment, contagiousness, and initial spread of SARS-CoV-2 in Canada". FACETS 6:180–194.
Penk, S. R., K. Bodner, J. S. Vargas Soto, E. S. Chenery, A. Nascou, and P. K. Molnár. 2021. "Mechanistic models can reveal infection pathways from prevalence data: the mysterious case of polar bears Ursus maritimus and Trichinella nativa." Oikos. 130(2).
Vargas Soto, J.S., R.A. Castaneda, N. Mandrak, and P.K. Molnár. 2021. "Estimating animal density in three dimensions using capture-frequency data from remote detectors". Remote Sensing in Ecology and Conservation 7(1):36–49.
A. Whitworth, C. Beirne, E. Flatt, R. Pillco Huarcaya, J.C. Cruz Diaz, A. Forsyth, P.K. Molnár, Juan S. Vargas Soto. (2018). "Secondary forest is utilized by Great Curassows (Crax rubra) and Great Tinamous (Tinamus major) in the absence of hunting." The Condor. 120(4).
Sandoval-Herrera, N. I., J. S. Vargas-Soto, M. Espinoza, T. M. Clarke, A. T. Fisk, and I. S. Wehrtmann. 2016. Mercury levels in muscle tissue of four common elasmobranch species from the Pacific coast of Costa Rica, Central America. Regional Studies in Marine Science 3:254–261
Conference proceedings talk at Testing Institute of America 2014 Annual Conference, Los Angeles, CA
Talk at London School of Testing, London, UK
Tutorial at UC-Berkeley Institute for Testing Science, Berkeley CA, USA
Talk at UC San Francisco, Department of Testing, San Francisco, California